BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

Abstract Background The ability to compare samples or studies easily using metabarcoding so as to better interpret microbial ecology results is an upcoming challenge. A growing number of metabarcoding pipelines are available, each with its own benefits and limitations. However, very few have been de...

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Bibliographic Details
Main Authors: Christophe Djemiel, Samuel Dequiedt, Battle Karimi, Aurélien Cottin, Thibault Girier, Yassin El Djoudi, Patrick Wincker, Mélanie Lelièvre, Samuel Mondy, Nicolas Chemidlin Prévost-Bouré, Pierre-Alain Maron, Lionel Ranjard, Sébastien Terrat
Format: Article
Language:English
Published: BMC 2020-10-01
Series:BMC Bioinformatics
Subjects:
Ecology
Metabarcoding
Bacterial
Archaeal
Fungal
Photosynthetic microeukaryotes
Online Access:http://link.springer.com/article/10.1186/s12859-020-03829-3

Internet

http://link.springer.com/article/10.1186/s12859-020-03829-3

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