Regional registration of whole slide image stacks containing major histological artifacts

Regional registration of whole slide image stacks containing major histological artifacts

Abstract Background High resolution 2D whole slide imaging provides rich information about the tissue structure. This information can be a lot richer if these 2D images can be stacked into a 3D tissue volume. A 3D analysis, however, requires accurate reconstruction of the tissue volume from the 2D i...

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Bibliographic Details
Main Authors: Mahsa Paknezhad, Sheng Yang Michael Loh, Yukti Choudhury, Valerie Koh Cui Koh, Timothy Tay Kwang Yong, Hui Shan Tan, Ravindran Kanesvaran, Puay Hoon Tan, John Yuen Shyi Peng, Weimiao Yu, Yongcheng Benjamin Tan, Yong Zhen Loy, Min-Han Tan, Hwee Kuan Lee
Format: Article
Language:English
Published: BMC 2020-12-01
Series:BMC Bioinformatics
Subjects:
Whole slide images
Immunohistochemistry images
Rigid registration
Blood vessel 3D reconstruction
Multi-scale attention
Online Access:https://doi.org/10.1186/s12859-020-03907-6

Internet

https://doi.org/10.1186/s12859-020-03907-6

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