CAGEfightR: analysis of 5′-end data using R/Bioconductor

CAGEfightR: analysis of 5′-end data using R/Bioconductor

Abstract Background 5′-end sequencing assays, and Cap Analysis of Gene Expression (CAGE) in particular, have been instrumental in studying transcriptional regulation. 5′-end methods provide genome-wide maps of transcription start sites (TSSs) with base pair resolution. Because active enhancers often...

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Bibliographic Details
Main Authors: Malte Thodberg, Axel Thieffry, Kristoffer Vitting-Seerup, Robin Andersson, Albin Sandelin
Format: Article
Language:English
Published: BMC 2019-10-01
Series:BMC Bioinformatics
Subjects:
Transcription start site
Promoter
Enhancer
Enhancer RNA
CAGE
5′-end methods
Online Access:http://link.springer.com/article/10.1186/s12859-019-3029-5

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http://link.springer.com/article/10.1186/s12859-019-3029-5

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