FSBC: fast string-based clustering for HT-SELEX data

FSBC: fast string-based clustering for HT-SELEX data

Abstract Background The combination of systematic evolution of ligands by exponential enrichment (SELEX) and deep sequencing is termed high-throughput (HT)-SELEX, which enables searching aptamer candidates from a massive amount of oligonucleotide sequences. A clustering method is an important proced...

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Bibliographic Details
Main Authors: Shintaro Kato, Takayoshi Ono, Hirotaka Minagawa, Katsunori Horii, Ikuo Shiratori, Iwao Waga, Koichi Ito, Takafumi Aoki
Format: Article
Language:English
Published: BMC 2020-06-01
Series:BMC Bioinformatics
Subjects:
SELEX
Aptamer
Next-generation sequencing
Sequence analysis
Online Access:http://link.springer.com/article/10.1186/s12859-020-03607-1

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http://link.springer.com/article/10.1186/s12859-020-03607-1

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