k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank

Genome evolution of microbes involves parent-to-offspring descent, and lateral genetic transfer that convolutes the phylogenomic signal. This study investigated phylogenomic signals among thousands of microbial genomes based on short subsequences without using multiple-sequence alignment. The signal...

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Bibliographic Details
Main Authors: Guillaume Bernard, Paul Greenfield, Mark A. Ragan, Cheong Xin Chan
Format: Article
Language:English
Published: American Society for Microbiology 2018-11-01
Series:mSystems
Subjects:
Online Access:https://doi.org/10.1128/mSystems.00257-18