phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

the analysis of microbial communities through dna sequencing brings many challenges: the integration of different types of data with methods from ecology, genetics, phylogenetics, multivariate statistics, visualization and testing. With the increased breadth of experimental designs now being pursued...

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Bibliographic Details
Main Authors: Paul J McMurdie, Susan Holmes
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2013-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC3632530?pdf=render