An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding

Abstract Background Transcription factor (TF) binding specificity is determined via a complex interplay between the transcription factor’s DNA binding preference and cell type-specific chromatin environments. The chromatin features that correlate with transcription factor binding in a given cell typ...

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Bibliographic Details
Main Authors: Divyanshi Srivastava, Begüm Aydin, Esteban O. Mazzoni, Shaun Mahony
Format: Article
Language:English
Published: BMC 2021-01-01
Series:Genome Biology
Online Access:https://doi.org/10.1186/s13059-020-02218-6