Quasispecies Analyses of the HIV-1 Near-full-length Genome with Illumina MiSeq

Quasispecies Analyses of the HIV-1 Near-full-length Genome with Illumina MiSeq

Human immunodeficiency virus type-1 (HIV-1) exhibits high between-host genetic diversity and within-host heterogeneity, recognized as quasispecies. Because HIV-1 quasispecies fluctuate in terms of multiple factors, such as antiretroviral exposure and host immunity, analyzing the HIV-1 genome is crit...

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Bibliographic Details
Main Authors: Hirotaka eOde, Masakazu eMatsuda, Kazuhiro eMatsuoka, Atsuko eHachiya, Junko eHattori, Yumiko eKito, Yoshiyuki eYokomaku, Yasumasa eIwatani, Wataru eSugiura
Format: Article
Language:English
Published: Frontiers Media S.A. 2015-11-01
Series:Frontiers in Microbiology
Subjects:
Drug Resistance
HIV-1
Deep sequencing
error correction
Quasispecies
consensus sequence estimation
Online Access:http://journal.frontiersin.org/Journal/10.3389/fmicb.2015.01258/full

Internet

http://journal.frontiersin.org/Journal/10.3389/fmicb.2015.01258/full

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