Segmentor: a tool for manual refinement of 3D microscopy annotations

Segmentor: a tool for manual refinement of 3D microscopy annotations

Abstract Background Recent advances in tissue clearing techniques, combined with high-speed image acquisition through light sheet microscopy, enable rapid three-dimensional (3D) imaging of biological specimens, such as whole mouse brains, in a matter of hours. Quantitative analysis of such 3D images...

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Bibliographic Details
Main Authors: David Borland, Carolyn M. McCormick, Niyanta K. Patel, Oleh Krupa, Jessica T. Mory, Alvaro A. Beltran, Tala M. Farah, Carla F. Escobar-Tomlienovich, Sydney S. Olson, Minjeong Kim, Guorong Wu, Jason L. Stein
Format: Article
Language:English
Published: BMC 2021-05-01
Series:BMC Bioinformatics
Subjects:
Tissue clearing
Light sheet microscopy
Deep learning
Image segmentation
Manual annotation
Online Access:https://doi.org/10.1186/s12859-021-04202-8

Internet

https://doi.org/10.1186/s12859-021-04202-8

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