LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms

LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms

We describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap() uses the grid graphics system, an alternative to the traditional R graphics system. T...

Full description

Bibliographic Details
Main Authors: Ji-Hyung Shin, Sigal Blay, Brad McNeney, Jinko Graham
Format: Article
Language:English
Published: Foundation for Open Access Statistics 2006-09-01
Series:Journal of Statistical Software
Online Access:http://www.jstatsoft.org/index.php/jss/article/view/1501
id doaj-d4719bf92b804d9fa4dfc41edd0e7272
record_format Article
spelling doaj-d4719bf92b804d9fa4dfc41edd0e72722020-11-25T00:52:18ZengFoundation for Open Access StatisticsJournal of Statistical Software1548-76602006-09-011611910.18637/jss.v016.c03105LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide PolymorphismsJi-Hyung ShinSigal BlayBrad McNeneyJinko GrahamWe describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap() uses the grid graphics system, an alternative to the traditional R graphics system. The features of the LDheatmap() function and the use of tools from the grid package to modify heat maps are illustrated by examples.http://www.jstatsoft.org/index.php/jss/article/view/1501
collection DOAJ
language English
format Article
sources DOAJ
author Ji-Hyung Shin
Sigal Blay
Brad McNeney
Jinko Graham
spellingShingle Ji-Hyung Shin
Sigal Blay
Brad McNeney
Jinko Graham
LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
Journal of Statistical Software
author_facet Ji-Hyung Shin
Sigal Blay
Brad McNeney
Jinko Graham
author_sort Ji-Hyung Shin
title LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
title_short LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
title_full LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
title_fullStr LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
title_full_unstemmed LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
title_sort ldheatmap: an r function for graphical display of pairwise linkage disequilibria between single nucleotide polymorphisms
publisher Foundation for Open Access Statistics
series Journal of Statistical Software
issn 1548-7660
publishDate 2006-09-01
description We describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap() uses the grid graphics system, an alternative to the traditional R graphics system. The features of the LDheatmap() function and the use of tools from the grid package to modify heat maps are illustrated by examples.
url http://www.jstatsoft.org/index.php/jss/article/view/1501
work_keys_str_mv AT jihyungshin ldheatmapanrfunctionforgraphicaldisplayofpairwiselinkagedisequilibriabetweensinglenucleotidepolymorphisms
AT sigalblay ldheatmapanrfunctionforgraphicaldisplayofpairwiselinkagedisequilibriabetweensinglenucleotidepolymorphisms
AT bradmcneney ldheatmapanrfunctionforgraphicaldisplayofpairwiselinkagedisequilibriabetweensinglenucleotidepolymorphisms
AT jinkograham ldheatmapanrfunctionforgraphicaldisplayofpairwiselinkagedisequilibriabetweensinglenucleotidepolymorphisms
_version_ 1725242943770460160

Similar Items