Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction

Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction

Abstract Background As one of the most successful knowledge-based energy functions, the distance-dependent atom-pair potential is widely used in all aspects of protein structure prediction, including conformational search, model refinement, and model assessment. During the last two decades, great ef...

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Bibliographic Details
Main Authors: Yuangen Yao, Rong Gui, Quan Liu, Ming Yi, Haiyou Deng
Format: Article
Language:English
Published: BMC 2017-12-01
Series:BMC Bioinformatics
Subjects:
Distance-dependent atom-pair potential
Protein structure prediction
Distance cutoff
Residue interval
Reference state
Online Access:http://link.springer.com/article/10.1186/s12859-017-1983-3

Internet

http://link.springer.com/article/10.1186/s12859-017-1983-3

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