OutbreakFinder: a visualization tool for rapid detection of bacterial strain clusters based on optimized multidimensional scaling

OutbreakFinder: a visualization tool for rapid detection of bacterial strain clusters based on optimized multidimensional scaling

With the evolution of next generation sequencing (NGS) technologies, whole-genome sequencing of bacterial isolates is increasingly employed to investigate epidemiology. Phylogenetic analysis is the common method for using NGS data, usually for comparing closeness between bacterial isolates to detect...

Full description

Bibliographic Details
Main Authors: Ming-Hsin Tsai, Yen-Yi Liu, Chih-Chieh Chen
Format: Article
Language:English
Published: PeerJ Inc. 2019-08-01
Series:PeerJ
Subjects:
Multidimensional scaling
Microbiome clustering
Affinity propagation
Disease outbreak detection
MDS
Online Access:https://peerj.com/articles/7600.pdf

Internet

https://peerj.com/articles/7600.pdf

Similar Items