A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts

A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts

Abstract Objectives We report a transcriptome acquisition for the bath sponge Spongia officinalis, a non-model marine organism that hosts rich symbiotic microbial communities. To this end, a pipeline was developed to efficiently separate between bacterial expressed genes from those of eukaryotic ori...

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Bibliographic Details
Main Authors: Tereza Manousaki, Vasiliki Koutsouveli, Jacques Lagnel, Spyridon Kollias, Costas S. Tsigenopoulos, Christos Arvanitidis, Antonios Magoulas, Costas Dounas, Thanos Dailianis
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Research Notes
Subjects:
Porifera
Marine invertebrate
Prokaryotic symbionts
RNAseq
Heat stress
Bioinformatics
Online Access:https://doi.org/10.1186/s13104-019-4843-6

Internet

https://doi.org/10.1186/s13104-019-4843-6

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