SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

Abstract Background Technological developments in the emerging field of spatial transcriptomics have opened up an unexplored landscape where transcript information is put in a spatial context. Clustering commonly constitutes a central component in analyzing this type of data. However, deciding on th...

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Bibliographic Details
Main Authors: Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg
Format: Article
Language:English
Published: BMC 2020-04-01
Series:BMC Bioinformatics
Subjects:
Spatial transcriptomics
Cluster analysis
Data visualization
R package
Online Access:http://link.springer.com/article/10.1186/s12859-020-3489-7

Internet

http://link.springer.com/article/10.1186/s12859-020-3489-7

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