Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Advances in sequencing have generated a large number of complete genomes. Traditionally, phylogenetic analysis relies on alignments of orthologs, but defining orthologs and separating them from paralogs is a complex task that may not always be suited to the large datasets of the future. An alternati...
Main Authors: | Raquel Bromberg, Nick V Grishin, Zbyszek Otwinowski |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2016-06-01
|
Series: | PLoS Computational Biology |
Online Access: | https://doi.org/10.1371/journal.pcbi.1004985 |
Similar Items
-
High-resolution cryo-EM reconstructions in the presence of substantial aberrations
by: Raquel Bromberg, et al.
Published: (2020-05-01) -
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction
by: Sriram P. Chockalingam, et al.
Published: (2020-11-01) -
Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer
by: Kujin Tang, et al.
Published: (2018-04-01) -
PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction
by: Yongyong Kang, et al.
Published: (2019-01-01) -
Gene order rearrangement methods for the reconstruction of phylogeny
by: Bernt, Matthias
Published: (2010)