ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Abstract Background Metagenomics studies provide valuable insight into the composition and function of microbial populations from diverse environments; however, the data processing pipelines that rely on mapping reads to gene catalogs or genome databases for cultured strains yield results that under...

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Bibliographic Details
Main Authors: Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue
Format: Article
Language:English
Published: BMC 2020-06-01
Series:BMC Bioinformatics
Subjects:
Metagenomics
Analysis workflow
Annotation
Metagenome-assembled genomes
Online Access:http://link.springer.com/article/10.1186/s12859-020-03585-4

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http://link.springer.com/article/10.1186/s12859-020-03585-4

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