Comparative Subsequence Sets Analysis (CoSSA) is a robust approach to identify haplotype specific SNPs; mapping and pedigree analysis of a potato wart disease resistance gene Sen3

Comparative Subsequence Sets Analysis (CoSSA) is a robust approach to identify haplotype specific SNPs; mapping and pedigree analysis of a potato wart disease resistance gene Sen3

Abstract Background Standard strategies to identify genomic regions involved in a specific trait variation are often limited by time and resource consuming genotyping methods. Other limiting pre-requisites are the phenotyping of large segregating populations or of diversity panels and the availabili...

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Bibliographic Details
Main Authors: Charlotte Prodhomme, Danny Esselink, Theo Borm, Richard G. F. Visser, Herman J. van Eck, Jack H. Vossen
Format: Article
Language:English
Published: BMC 2019-05-01
Series:Plant Methods
Subjects:
Bulked segregant analysis (BSA)
Whole genome sequencing (WGS)
Reference genome
k-mers
Diagnostic markers
Potato wart disease
Online Access:http://link.springer.com/article/10.1186/s13007-019-0445-5

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http://link.springer.com/article/10.1186/s13007-019-0445-5

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