STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

Abstract Background De novo assembly of RNA-seq data allows the study of transcriptome in absence of a reference genome either if data is obtained from a single organism or from a mixed sample as in metatranscriptomics studies. Given the high number of sequences obtained from NGS approaches, a criti...

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Bibliographic Details
Main Authors: Igor Saggese, Elisa Bona, Max Conway, Francesco Favero, Marco Ladetto, Pietro Liò, Giovanni Manzini, Flavio Mignone
Format: Article
Language:English
Published: BMC 2018-07-01
Series:BMC Bioinformatics
Online Access:http://link.springer.com/article/10.1186/s12859-018-2174-6