A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids

A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids

Abstract Background Genotyping-by-sequencing (GBS) has been used broadly in genetic studies for several species, especially those with agricultural importance. However, its use is still limited in autopolyploid species because genotype calling software generally fails to properly distinguish heteroz...

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Bibliographic Details
Main Authors: Guilherme S. Pereira, Antonio Augusto F. Garcia, Gabriel R. A. Margarido
Format: Article
Language:English
Published: BMC 2018-11-01
Series:BMC Bioinformatics
Subjects:
Genotyping-by-sequencing
Ploidy estimation
Allele dosage
Population structure
Linkage mapping
GWAS
Online Access:http://link.springer.com/article/10.1186/s12859-018-2433-6

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http://link.springer.com/article/10.1186/s12859-018-2433-6

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