The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants

The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants

IntroductionRibosomal DNA (rDNA) loci have been widely used for identification of allopolyploids and hybrids, although few of these studies employed high-throughput sequencing data. Here we use graph clustering implemented in the RepeatExplorer (RE) pipeline to analyze homoeologous 5S rDNA arrays at...

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Bibliographic Details
Main Authors: Sònia Garcia, Jonathan F. Wendel, Natalia Borowska-Zuchowska, Malika Aïnouche, Alena Kuderova, Ales Kovarik
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-02-01
Series:Frontiers in Plant Science
Subjects:
5S rRNA genes
allopolyploidy
hybridization
evolution
graph structure clustering
high-throughput sequencing
Online Access:https://www.frontiersin.org/article/10.3389/fpls.2020.00041/full

Internet

https://www.frontiersin.org/article/10.3389/fpls.2020.00041/full

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