Viral coinfection analysis using a MinHash toolkit

Viral coinfection analysis using a MinHash toolkit

Abstract Background Human papillomavirus (HPV) is a common sexually transmitted infection associated with cervical cancer that frequently occurs as a coinfection of types and subtypes. Highly similar sublineages that show over 100-fold differences in cancer risk are not distinguishable in coinfectio...

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Bibliographic Details
Main Authors: Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin
Format: Article
Language:English
Published: BMC 2019-07-01
Series:BMC Bioinformatics
Subjects:
HPV
Human papillomavirus
MinHash
Kmers
Coinfection
Bioinformatics
Online Access:http://link.springer.com/article/10.1186/s12859-019-2918-y

Internet

http://link.springer.com/article/10.1186/s12859-019-2918-y

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