SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Abstract Background Human tissue is increasingly being whole genome sequenced as we transition into an era of genomic medicine. With this arises the potential to detect sequences originating from microorganisms, including pathogens amid the plethora of human sequencing reads. In cancer research, the...

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Bibliographic Details
Main Authors: Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel S. Brewer
Format: Article
Language:English
Published: BMC 2019-10-01
Series:Genome Biology
Subjects:
Metagenomics
Pipeline
Taxonomy
Classification
SEPATH
Cancer
Online Access:http://link.springer.com/article/10.1186/s13059-019-1819-8

Internet

http://link.springer.com/article/10.1186/s13059-019-1819-8

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