Tiling Nussinov’s RNA folding loop nest with a space-time approach

Tiling Nussinov’s RNA folding loop nest with a space-time approach

Abstract Background An RNA primary structure, or sequence, is a single strand considered as a chain of nucleotides from the alphabet AUGC (adenine, uracil, guanine, cytosine). The strand can be folded onto itself, i.e., one segment of an RNA sequence might be paired with another segment of the same...

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Bibliographic Details
Main Authors: Marek Palkowski, Wlodzimierz Bielecki
Format: Article
Language:English
Published: BMC 2019-04-01
Series:BMC Bioinformatics
Subjects:
RNA folding
Loop tiling
Space-time tiling
Nussinov’s algorithm
Parallel computing
Online Access:http://link.springer.com/article/10.1186/s12859-019-2785-6

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http://link.springer.com/article/10.1186/s12859-019-2785-6

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