Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner

DEAD-box RNA helicase Ded1 is thought to resolve secondary structures in mRNA 5'-untranslated regions (5'-UTRs) that impede 48S preinitiation complex (PIC) formation at the initiation codon. We reconstituted Ded1 acceleration of 48S PIC assembly on native mRNAs in a pure system, and recapi...

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Main Authors: Neha Gupta, Jon R Lorsch, Alan G Hinnebusch
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2018-10-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/38892
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spelling doaj-f9b3b39aa6e64d49b72b64614ae651182021-05-05T16:11:18ZengeLife Sciences Publications LtdeLife2050-084X2018-10-01710.7554/eLife.38892Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent mannerNeha Gupta0https://orcid.org/0000-0002-1845-2940Jon R Lorsch1https://orcid.org/0000-0002-4521-4999Alan G Hinnebusch2https://orcid.org/0000-0002-1627-8395Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United StatesEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United StatesEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United StatesDEAD-box RNA helicase Ded1 is thought to resolve secondary structures in mRNA 5'-untranslated regions (5'-UTRs) that impede 48S preinitiation complex (PIC) formation at the initiation codon. We reconstituted Ded1 acceleration of 48S PIC assembly on native mRNAs in a pure system, and recapitulated increased Ded1-dependence of mRNAs that are Ded1-hyperdependent in vivo. Stem-loop (SL) structures in 5'-UTRs of native and synthetic mRNAs increased the Ded1 requirement to overcome their intrinsically low rates of 48S PIC recruitment. Ded1 acceleration of 48S assembly was greater in the presence of eIF4F, and domains mediating one or more Ded1 interactions with eIF4G or helicase eIF4A were required for efficient recruitment of all mRNAs; however, the relative importance of particular Ded1 and eIF4G domains were distinct for each mRNA. Our results account for the Ded1 hyper-dependence of mRNAs with structure-prone 5'-UTRs, and implicate an eIF4E·eIF4G·eIF4A·Ded1 complex in accelerating 48S PIC assembly on native mRNAs.https://elifesciences.org/articles/38892translationinitiationDed1eIF4Gyeast
collection DOAJ
language English
format Article
sources DOAJ
author Neha Gupta
Jon R Lorsch
Alan G Hinnebusch
spellingShingle Neha Gupta
Jon R Lorsch
Alan G Hinnebusch
Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
eLife
translation
initiation
Ded1
eIF4G
yeast
author_facet Neha Gupta
Jon R Lorsch
Alan G Hinnebusch
author_sort Neha Gupta
title Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
title_short Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
title_full Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
title_fullStr Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
title_full_unstemmed Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
title_sort yeast ded1 promotes 48s translation pre-initiation complex assembly in an mrna-specific and eif4f-dependent manner
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2018-10-01
description DEAD-box RNA helicase Ded1 is thought to resolve secondary structures in mRNA 5'-untranslated regions (5'-UTRs) that impede 48S preinitiation complex (PIC) formation at the initiation codon. We reconstituted Ded1 acceleration of 48S PIC assembly on native mRNAs in a pure system, and recapitulated increased Ded1-dependence of mRNAs that are Ded1-hyperdependent in vivo. Stem-loop (SL) structures in 5'-UTRs of native and synthetic mRNAs increased the Ded1 requirement to overcome their intrinsically low rates of 48S PIC recruitment. Ded1 acceleration of 48S assembly was greater in the presence of eIF4F, and domains mediating one or more Ded1 interactions with eIF4G or helicase eIF4A were required for efficient recruitment of all mRNAs; however, the relative importance of particular Ded1 and eIF4G domains were distinct for each mRNA. Our results account for the Ded1 hyper-dependence of mRNAs with structure-prone 5'-UTRs, and implicate an eIF4E·eIF4G·eIF4A·Ded1 complex in accelerating 48S PIC assembly on native mRNAs.
topic translation
initiation
Ded1
eIF4G
yeast
url https://elifesciences.org/articles/38892
work_keys_str_mv AT nehagupta yeastded1promotes48stranslationpreinitiationcomplexassemblyinanmrnaspecificandeif4fdependentmanner
AT jonrlorsch yeastded1promotes48stranslationpreinitiationcomplexassemblyinanmrnaspecificandeif4fdependentmanner
AT alanghinnebusch yeastded1promotes48stranslationpreinitiationcomplexassemblyinanmrnaspecificandeif4fdependentmanner
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