Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection

Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection

Abstract Background Several studies demonstrated the feasibility of predicting bacterial antibiotic resistance phenotypes from whole-genome sequences, the prediction process usually amounting to detecting the presence of genes involved in antibiotic resistance mechanisms, or of specific mutations, p...

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Bibliographic Details
Main Authors: Pierre Mahé, Maud Tournoud
Format: Article
Language:English
Published: BMC 2018-10-01
Series:BMC Bioinformatics
Subjects:
Genotype-phenotype
Feature selection
k-mers
Lasso
Online Access:http://link.springer.com/article/10.1186/s12859-018-2403-z

Internet

http://link.springer.com/article/10.1186/s12859-018-2403-z

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