SOAPdenovo2: an empirically improved memory-efficient short-read <it>de novo</it> assembler

SOAPdenovo2: an empirically improved memory-efficient short-read <it>de novo</it> assembler

<p>Abstract</p> <p>Background</p> <p>There is a rapidly increasing amount of <it>de novo</it> genome assembly using next-generation sequencing (NGS) short reads; however, several big challenges remain to be overcome in order for this to be efficient and accu...

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Bibliographic Details
Main Authors: Luo Ruibang, Liu Binghang, Xie Yinlong, Li Zhenyu, Huang Weihua, Yuan Jianying, He Guangzhu, Chen Yanxiang, Pan Qi, Liu Yunjie, Tang Jingbo, Wu Gengxiong, Zhang Hao, Shi Yujian, Liu Yong, Yu Chang, Wang Bo, Lu Yao, Han Changlei, Cheung David W, Yiu Siu-Ming, Peng Shaoliang, Xiaoqian Zhu, Liu Guangming, Liao Xiangke, Li Yingrui, Yang Huanming, Wang Jian, Lam Tak-Wah, Wang Jun
Format: Article
Language:English
Published: Oxford University Press 2012-12-01
Series:GigaScience
Subjects:
Genome
Assembly
Contig
Scaffold
Error correction
Gap-filling
Online Access:http://www.gigasciencejournal.com/content/1/1/18

Internet

http://www.gigasciencejournal.com/content/1/1/18

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