Constructing Phylogenetic Trees Using Maximum Likelihood

Maximum likelihood methods are used to estimate the phylogenetic trees for a set of species. The probabilities of DNA base substitutions are modeled by continuous-time Markov chains. We use these probabilities to estimate which DNA bases would produce the data that we observe. The topology of the tr...

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Bibliographic Details
Main Author: Cho, Anna
Format: Others
Published: Scholarship @ Claremont 2012
Subjects:
Online Access:http://scholarship.claremont.edu/scripps_theses/46
http://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1047&context=scripps_theses