Coarse-grained molecular dynamics simulations of DNA representing bases as ellipsoids
We conducted a study of various physical and geometric properties of single and double stranded DNA by developing a coarse-grained computational model. To represent the steric shapes of the bases more accurately, we modelled their interactions using the ellipsoidal RE² potential [18]. The bond, angl...
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| Language: | English |
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University of British Columbia
2009
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| Online Access: | http://hdl.handle.net/2429/12543 |