CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

Q (query) fever is an infectious zoonotic disease caused by the Gram-negative bacterium Coxiella burnetii. Although the disease has been studied for decades, it still represents a threat due to sporadic outbreaks across farms in Europe. The absence of a central platform for Coxiella typing data mana...

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Bibliographic Details
Main Authors: Dandekar, T. (Author), Fasemore, A.M (Author), Förstner, K.U (Author), Frangoulidis, D. (Author), Helbich, A. (Author), Vergnaud, G. (Author), Walter, M.C (Author)
Format: Article
Language:English
Published: American Society for Microbiology 2021
Subjects:
adaa gene
amplicon
Article
bacterial chromosome
bacterial DNA
bacterial gene
bacterial genome
bacterial strain
bacterium isolate
computer model
contig
Coxiella
Coxiella burnetii
data base
epidemiological surveillance
gene insertion sequence
genome size
genomics
genotyping
Genotyping
metadata
molecular phylogeny
multilocus sequence typing
nonhuman
open source software
phylogenetic tree
plasmid
Q fever
sequence analysis
Typing
Web platform
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Internet

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