S-conLSH: alignment-free gapped mapping of noisy long reads

S-conLSH: alignment-free gapped mapping of noisy long reads

Background: The advancement of SMRT technology has unfolded new opportunities of genome analysis with its longer read length and low GC bias. Alignment of the reads to their appropriate positions in the respective reference genome is the first but costliest step of any analysis pipeline based on SMR...

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Bibliographic Details
Main Authors: Bandyopadhyay, S. (Author), Chakraborty, A. (Author), Morgenstern, B. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
algorithm
Algorithms
Alignment
Alignment-free sequence comparison
article
Conserved regions
diagnostic test accuracy study
DNA sequence
downstream processing
Downstream-processing
gene mapping
high throughput sequencing
High-Throughput Nucleotide Sequencing
human
Humans
locality sensitive hashing
Locality sensitive hashing
Mapping
Noisy long SMRT reads
plant seed
sequence alignment
Sequence Alignment
sequence analysis
Sequence analysis
Sequence Analysis, DNA
Sequence mappings
Simulated datasets
simulation
software
Software
State of the art
Variable length
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