tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R

tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R

Background: The drive to understand how microbial communities interact with their environments has inspired innovations across many fields. The data generated from sequence-based analyses of microbial communities typically are of high dimensionality and can involve multiple data tables consisting of...

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Bibliographic Details
Main Authors: Arbet, J. (Author), Carpenter, C.M (Author), Frank, D.N (Author), Kechris, K. (Author), Kroehl, M.E (Author), Wagner, B.D (Author), Williamson, K. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
article
data analysis
Data Analysis
Data structures
Data visualization
Digital storage
exploratory research
Exploratory visualizations
High dimensionality
Information management
Microbial communities
microbiome
Microbiome
Microbiota
microflora
Microorganisms
Negative binomial
nonhuman
Novel visualizations
Open source
Open source collaboration
Open source software
Open systems
pipeline
Pipeline
Pipelines
R
Regression modelling
software
Software
Software testing
Standard analysis
Tidyverse
vignette
Visualization
workflow
Workflow
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