cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets

cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets

Background: The quantity of genomic data is expanding at an increasing rate. Tools for phylogenetic analysis which scale to the quantity of available data are required. To address this need, we present cognac, a user-friendly software package to rapidly generate concatenated gene alignments for phyl...

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Bibliographic Details
Main Authors: Crawford, R.D (Author), Snitkin, E.S (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Alignment
article
Bacteria
bacterial genome
bacterium
classification
Concatenated gene tree
Core genome
Databases, Genetic
Data-driven approach
Diverse applications
Escherichia
Family Characteristics
family size
Genes
genetic database
genetics
Genome, Bacterial
Large dataset
marker gene
Marker genes
Multiple sequence alignment
nonhuman
Phylogenetic analysis
Phylogenetic inference
Phylogenetics
phylogeny
Phylogeny
Rapid generations
sequence alignment
software
Software
User-friendly-software
whole genome sequencing
Whole genome sequencing
Whole Genome Sequencing
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