PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

Background: Bioimaging techniques offer a robust tool for studying molecular pathways and morphological phenotypes of cell populations subjected to various conditions. As modern high-resolution 3D microscopy provides access to an ever-increasing amount of high-quality images, there arises a need for...

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Bibliographic Details
Main Authors: Basu, S. (Author), Bokota, G. (Author), Das, N. (Author), Grabowska, A. (Author), Magalska, A. (Author), Plewczynski, D. (Author), Sroka, J. (Author), Trzaskoma, P. (Author), Yushkevich, Y. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
3D FISH
3D reconstruction
algorithm
Algorithms
article
Batch processing
Bioimaging
Bioimaging techniques
biologist
Cell culture
cell nucleus
Cell Nucleus
Cell proliferation
Cells
chromatin
Chromatin
Computational experiment
Data handling
electron microscopy
Electron microscopy
feature extraction
human
Image analysis
image processing
Image Processing, Computer-Assisted
Image reconstruction
Image segmentation
Imaging, Three-Dimensional
learning curve
microscopy
Microscopy
Multi-scale approaches
Multiscale segmentation
Nucleus
pipeline
Pipeline processing systems
Quality control
quantitative analysis
Quantitative features
Segmentation
segmentation algorithm
State-of-the-art algorithms
Steep learning curve
Super-resolution microscopy
three-dimensional imaging
User friendly interface
User interfaces
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Internet

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