Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

Background: Polyploidy is very common in plants and can be seen as one of the key drivers in the domestication of crops and the establishment of important agronomic traits. It can be the main source of genomic repatterning and introduces gene duplications, affecting gene expression and alternative s...

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Bibliographic Details
Main Authors: Burg, A. (Author), Madritsch, S. (Author), Sehr, E.M (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Alternative splicing
Arabidopsis thaliana
Autotetraploid
Comparative evaluations
Crops
De novo assemblies
De novo transcriptome assembly
Development and testing
Functional mechanisms
Gene expression
gene expression profiling
Gene Expression Profiling
high throughput sequencing
High-Throughput Nucleotide Sequencing
human
Humans
Plants
Plants (botany)
Polyploid
polyploidy
Polyploidy
RNA-seq
sequence analysis
Sequence Analysis, RNA
Short transcripts
transcriptome
Transcriptome
Transcriptome assemblies
TransLiG
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