SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

Background: Synthetic long reads (SLR) with long-range co-barcoding information are now widely applied in genomics research. Although several tools have been developed for each specific SLR technique, a robust standalone scaffolder with high efficiency is warranted for hybrid genome assembly. Result...

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Bibliographic Details
Main Authors: Chen, F. (Author), Deng, L. (Author), Fan, G. (Author), Gu, S. (Author), Guo, L. (Author), Liu, X. (Author), Seim, I. (Author), Wang, O. (Author), Wang, W. (Author), Xu, M. (Author), Xu, X. (Author), Zhao, X. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
algorithm
Algorithms
article
benchmarking
DNA sequence
Genome assembly
genomics
Genomics
Graphic methods
high throughput sequencing
High-efficiency
High-Throughput Nucleotide Sequencing
human
Humans
Hybrid assembly
Next-generation sequencing
Open source software
Open systems
Open-source code
Paired-end reads
Scaffolding
Scaffolds
Screening algorithms
Sequence Analysis, DNA
Single tubes
software
Software
Synthetic long reads
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