FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

Background: Gene annotation in eukaryotes is a non-trivial task that requires meticulous analysis of accumulated transcript data. Challenges include transcriptionally active regions of the genome that contain overlapping genes, genes that produce numerous transcripts, transposable elements and numer...

Full description

Bibliographic Details
Main Authors: Andorf, C.M (Author), Banerjee, S. (Author), Bhandary, P. (Author), Sen, T.Z (Author), Wise, R.P (Author), Woodhouse, M. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Application programs
Automation
Changepoint detection
Comprehensive analysis
Computational methods
Computational tools
Eukaryota
eukaryote
Eukaryotic gene annotation
Experimental conditions
Gene prediction
genetics
genome
Genome
Genomics
Meticulous analysis
molecular genetics
Molecular Sequence Annotation
Optimized RNA-Seq alignment
Pipeline processing systems
Pipelines
Pre-processing step
Proteins
RNA
RNA-Seq
sequence analysis
Sequence Analysis, RNA
software
Software
Software applications
Transcription
Transcriptionally active
Transcriptomics
Transposable elements
Online Access:View Fulltext in Publisher

Internet

View Fulltext in Publisher

Similar Items