SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

Background: RNA sequencing (RNA-seq) is a common and widespread biological assay, and an increasing amount of data is generated with it. In practice, there are a large number of individual steps a researcher must perform before raw RNA-seq reads yield directly valuable information, such as different...

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Bibliographic Details
Main Authors: Aguilar-Ordoñez, I. (Author), Barry, B.K (Author), Burke, E.E (Author), Collado-Torres, L. (Author), Eagles, N.J (Author), Gutiérrez-Millán, E. (Author), Huuki, L. (Author), Jaffe, A.E (Author), Leonard, J. (Author), Phan, B.D.N (Author), Serrato, V.L (Author), Stolz, J.M (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Analysis solution
article
Bioconductor
biologist
Computational domains
Computational framework
Computing environments
Configuration files
Data handling
Differential gene expressions
Expression analysis
Gene expression
high throughput sequencing
High-Throughput Nucleotide Sequencing
human
pipeline
Pipeline
Pipelines
RNA
RNA sequencing
RNA-seq
RNA-Seq
sequence analysis
Sequence Analysis, RNA
shipyard worker
software
Software
Technical background
workflow
Workflow
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