SAUTE: sequence assembly using target enrichment

SAUTE: sequence assembly using target enrichment

Background: Illumina is the dominant sequencing technology at this time. Short length, short insert size, some systematic biases, and low-level carryover contamination in Illumina reads continue to make assembly of repeated regions a challenging problem. Some applications also require finding multip...

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Bibliographic Details
Main Authors: Agarwala, R. (Author), Souvorov, A. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
algorithm
Algorithms
Antimicrobial resistance
Carry-over contamination
Coding sequences
de Bruijn graphs
De Bruijn graphs
De-novo assembly
DNA sequence
genome
Genome
Genomic regions
genomics
Genomics
high throughput sequencing
High-Throughput Nucleotide Sequencing
Illumina reads
Protein sequences
Proteins
RNA
RNA-seq
RNA-Seq
Sequence Analysis, DNA
Sequence assemblies
Shovels
Target proteins
Target sequences
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