Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCpos

Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCpos

Background: Assessing the nucleosome-forming potential of specific DNA sequences is important for understanding complex chromatin organization. Methods for predicting nucleosome positioning include bioinformatics and biophysical approaches. An advantage of bioinformatics methods, which are based on...

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Bibliographic Details
Main Authors: Kato, H. (Author), Shimizu, M. (Author), Urano, T. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
animal
Animals
Binding affinities
Binding energy
Bioinformatics
Bioinformatics methods
chromatin
Chromatin
Chromatin organization
Chromatin regulation
Chromosomes
dHMM
DNA
DNA sequences
Forecasting
Genetic alterations
genetics
HBA
high throughput sequencing
High-Throughput Nucleotide Sequencing
High-throughput sequencing
Local HBA
Mammals
Mice
micrococcal nuclease
Micrococcal Nuclease
mouse
Nuclease digestion
Nucleosomal DNA subsegments
nucleosome
Nucleosome
Nucleosome formation
Nucleosomes
Prediction of nucleosome positions
Translational and rotational settings
Yeast
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