Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

Background: The DNA sequences encoding ribosomal RNA genes (rRNAs) are commonly used as markers to identify species, including in metagenomics samples that may combine many organismal communities. The 16S small subunit ribosomal RNA (SSU rRNA) gene is typically used to identify bacterial and archaea...

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Bibliographic Details
Main Authors: Johnston, A. (Author), Karsch-Mizrachi, I. (Author), McVeigh, R. (Author), Nawrocki, E.P (Author), Robbertse, B. (Author), Schäffer, A.A (Author), Schoch, C.L (Author), Underwood, B.A (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Alignment
Annotation
Bacteria
Browser interfaces
Candidate sequences
Covariance models
Databases, Nucleic Acid
DNA sequences
DNA, Ribosomal
Genes
genetics
Hidden Markov models
National center for biotechnology informations
ncRNA
nucleic acid database
Phylogenetic studies
phylogeny
Phylogeny
Profile hidden Markov model
Quality control
Ribosomal RNA
ribosome DNA
ribosome RNA
RNA
RNA 16S
RNA 18S
RNA, Ribosomal
RNA, Ribosomal, 16S
RNA, Ribosomal, 18S
Secondary structures
sequence analysis
Sequence analysis
Sequence Analysis, RNA
Software packages
Verification
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