Searchlight: automated bulk RNA-seq exploration and visualisation using dynamically generated R scripts

Searchlight: automated bulk RNA-seq exploration and visualisation using dynamically generated R scripts

Background: Once bulk RNA-seq data has been processed, i.e. aligned and then expression and differential tables generated, there remains the essential process where the biology is explored, visualized and interpreted. Without the use of a visualisation and interpretation pipeline this step can be ti...

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Bibliographic Details
Main Authors: Cole, J.J (Author), Faydaci, B.A (Author), Goodyear, C.S (Author), Maciewicz, R.A (Author), McGuinness, D. (Author), Robertson, N.A (Author), Shaw, R. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
article
automation
Automation
bioinformatician
Bioinformaticians
Bulk
Data
Downstream users
experimental design
Exploration
Gene levels
human
mining
Mining
pipeline
Pipeline
Pipelines
publication
Publications
Quality control
Reanalysis
RNA
RNA sequencing
RNA-seq
RNA-Seq
RNA-Seq datum
Searchlights
Service provider
Signatures
software
Software
transcriptomics
Transcriptomics
User friendly
Visual analysis
Visualisation
Visualization
whole exome sequencing
Whole Exome Sequencing
workflow
Workflow
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