Comparison of sequencing data processing pipelines and application to underrepresented African human populations

Comparison of sequencing data processing pipelines and application to underrepresented African human populations

Background: Population genetic studies of humans make increasing use of high-throughput sequencing in order to capture diversity in an unbiased way. There is an abundance of sequencing technologies, bioinformatic tools and the available genomes are increasing in number. Studies have evaluated and co...

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Bibliographic Details
Main Authors: Breton, G. (Author), Jakobsson, M. (Author), Johansson, A.C.V (Author), Schlebusch, C.M (Author), Sjödin, P. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
adult
Analysis toolkits
article
Bioinformatics
biology
Comparison of pipeline
Comparison of pipelines
Computational Biology
controlled study
Data handling
female
filtration
gene frequency
Genes
genome
Genome
Genome analyse toolkit
genome analysis
Genome analysis
Genome Analysis Toolkit (GATK)
genotype
High coverage genome
High coverage genomes
high throughput sequencing
High-Throughput Nucleotide Sequencing
High-throughput sequencing
High-throughput sequencing (HTS)
human
human diversity
human experiment
Humans
indel mutation
INDEL Mutation
major clinical study
male
Next generation sequencing
Next generation sequencing (NGS)
Next-generation sequencing
pipeline
Pipeline processing systems
Pipelines
Polymorphism, Single Nucleotide
Population statistics
sample size
single nucleotide polymorphism
Surveys
Underrepresented ancestry
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