BRNI: Modular analysis of transcriptional regulatory programs

by Nachman, Iftach, Regev, Aviv
Published 2010

Allelic variants of IL1R1 gene associate with severe hand osteoarthritis

by Näkki, Annu, Kouhia, Sanna T., Saarela, Janna, Harilainen, Arsi, Tallroth, Kaj, Videman, Tapio, Battié, Michele C., Kaprio, Jaakko, Kujala, Urho M., Peltonen, Leena
Published 2012

Major copy proportion analysis of tumor samples using SNP arrays

by Li, Cheng, Beroukhim, Rameen, Weir, Barbara A., Winckler, Wendy, Garraway, Levi A., Sellers, William R., Meyerson, Matthew L.
Published 2010

Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes

by van het Hoog, Marco, Rast, Timothy J, Martchenko, Mikhail, Grindle, Suzanne, Dignard, Daniel, Hogues, Herve, Cuomo, Christina, Berriman, Matthew, Scherer, Stewart, Whiteway, Malcolm, Chibana, Hiroji, Nantel, Andre, Magee, P. T., Magee, B. B.
Published 2010

A large scale survey reveals that chromosomal copy-number alterations significantly affect gene modules involved in cancer initiation and progression

by Alloza, Eva, Cigudosa, Juan C., Dopazo, Joaquín, Al-Shahrour, Fatima
Published 2012

Positive selection for unpreferred codon usage in eukaryotic genomes

by Neafsey, Daniel E., Galagan, James E.
Published 2010

Portraits of breast cancer progression

by Alexe, Gabriela, Scanfeld, Daniel, Tamayo, Pablo, Ganesan, Shridar, DeLisi, Charles, Bhanot, Gyan, Dalgin, Gul S., Mesirov, Jill P.
Published 2010

Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum

by Baker, Michelle L., Indiviglio, Sandra, Nyberg, April M, Rosenberg, George H, Lindblad-Toh, Kerstin, Miller, Robert D., Papenfuss, Anthony T.
Published 2010

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence

by Neafsey, Daniel E., Volkman, Sarak K., Park, Daniel, Montgomery, Philip, Milner, Danny A., Lukens, Amanda K., Rosen, David, Daniels, Rachel F., Houde, Nathan, Cortese, Joseph F., Tyndall, Erin, Gates, Casey, Stange-Thomann, Nicole, Sarr, Ousmane, Ndiaye, Daouda, Ndir, Omar, Mboup, Soulyemane, Ferreira, Marcelo U., do Lago Moraes, Sandra, Dash, Aditya P., Chitnis, Chetan E., Wiegand, Roger C., Hartl, Daniel L., Birren, Bruce W., Wirth, Dyann F., Schaffner, Stephen F, Lander, Eric Steven, Sabeti, Pardis
Published 2010

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

by Orsi, Renato H., Borowsky, Mark L., Lauer, Peter, Young, Sarah K., Nusbaum, Chad, Galagan, James E., Birren, Bruce W., Ivy, Reid A., Sun, Qi, Graves, Lewis M., Swaminathan, Bala, Wiedmann, Martin
Published 2009

Vibrio chromosomes share common history

by Kirkup, Benjamin, Chang, LeeAnn, Chang, Sarah, Gevers, Dirk, Polz, Martin F.
Published 2011

Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth

by Plunkett, Jevon, Doniger, Scott, Morgan, Thomas, Haataja, Ritva, Hallman, Mikko, Puttonen, Hilkka, Menon, Ramkumar, Kuczynski, Edward, Norwitz, Errol, Snegovskikh, Victoria, Fellman, Vineta, DeFranco, Emily A., Chaudhari, Bimal P., Oates, John, Boutaud, Olivier, McGregor, Tracy L., McElroy, Jude J., Teramo, Kari, Borecki, Ingrid, Fay, Justin C., Muglia, Louis J., Palotie, Aarno, Peltonen, Leena
Published 2012

Phenotype-genotype association grid: a convenient method for summarizing multiple association analyses

by Levy, Daniel, DePalma, Steven R., Benjamin, Emelia J., O'Donnell, Christopher J., Parise, Helen, Hirschhorn, Joel N., Vasan, Ramachandran S., Izumo, Seigo, Larson, Martin G.
Published 2010

What makes us human?

by Mikkelsen, Tarjei Sigurd
Published 2010

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

by Wheeler, Douglas B., Kang, In Han, Golland, Polina, Papallo, Adam, Lindquist, Robert A., Jones, Thouis R., Van Dyk, Anne Carpenter, Sabatini, David
Published 2009

Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum

by Dharia, Neekesh V, Sidhu, Amar Bir Singh, Cassera, Maria Belen, Westenberger, Scott J, Bopp, Selina ER, Eastman, Rich T, Plouffe, David, Batalov, Serge, Volkman, Sarah K, Zhou, Yingyao, Fidock, David A, Winzeler, Elizabeth A, Park, Daniel J., Wirth, Dyann F.
Published 2010

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

by Mermel, Craig H., Schumacher, Steven E., Hill, Barbara, Meyerson, Matthew L., Beroukhim, Rameen, Getz, Gad
Published 2011

Model-based Analysis of ChIP-Seq (MACS)

by Zhang, Yong, Liu, Tao, Meyer, Clifford A., Eeckhoute, Jerome, Johnson, David S., Nusbaum, Chad, Myers, Richard M., Brown, Myles, Li, Wei, Liu, Xiaole S., Bernstein, Bradley E.
Published 2010

High-throughput gene expression profiling of memory differentiation in primary human T cells

by Angelosanto, Jill, Brosnahan, Kathleen, Ross, Kenneth, Hahn, Cynthia, Russell, Kate, Drury, Linda, Norton, Stephanie, Nadler, Lee, Stegmaier, Kimberly, Haining, W. Nicholas
Published 2010

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

by Daniels, Rachel F., Volkman, Sarah K., Milner, Danny A., Mahesh, Nira, Neafsey, Daniel E., Park, Daniel J., Rosen, David, Angelino, Elaine, Sabeti, Pardis C., Wirth, Dyann F., Wiegand, Roger C.
Published 2009