Finding RNA structure in the unstructured RBPome

by Ohler, Uwe, Orenstein, Yaron, Berger Leighton, Bonnie
Published 2018

Reconstruction of phyletic trees by global alignment of multiple metabolic networks

by Ma, Cheng-Yu, Lin, Shu-Hsi, Lee, Chi-Ching, Tang, Chuan Yi, Berger, Bonnie, Liao, Chung-Shou
Published 2013

An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability

by Wei, X. N., Han, B. C., Zhang, J. X., Liu, X. H., Tan, C. Y., Jiang, Y. Y., Low, Boon Chuan, Tidor, Bruce, Chen, Yu Zong
Published 2011

My sister's keeper?: genomic research and the identifiability of siblings

by Cassa, Christopher A., Schmidt, Brian, Kohane, Isaac, Mandl, Kenneth D.
Published 2010

Mapping transcription mechanisms from multimodal genomic data

by Chang, Hsun-Hsien, McGeachie, Michael John, Alterovitz, Gil, Ramoni, Marco F.
Published 2012

Open-target sparse sensing of biological agents using DNA microarray

by Mohtashemi, Mojdeh, Walburger, David K., Peterson, Matthew W., Sutton, Felicia N., Skaer, Haley B., Diggans, James C.
Published 2012

An integrative approach to ortholog prediction for disease-focused and other functional studies

by Hu, Yanhui, Flockhart, Ian, Vinayagam, Arunachalam, Bergwitz, Clemens, Perrimon, Norbert, Mohr, Stephanie E., Berger, Bonnie
Published 2012

The GENCODE human gene set

by Searle, S., Frankish, A., Bignell, A., Aken, B., Derrien, Thomas, Diekhans, M., Harte, R., Howald, C., Kokocinski, F., Lin, M., Tress, M., Van Baren, M., Barnes, I., Hunt, T., Carvalho-Silva, D., Davidson, C., Donaldson, S., Gilbert, J., Kay, M., Lloyd, D., Loveland, J., Mudge, J., Snow, C., Vamathevan, J., Wilming, L., Brent, M., Gerstein, Mark B., Guigo, Roderic, Kellis, Manolis, Reymond, A., Zadissa, A., Valencia, A., Harrow, J., Hubbard, T.
Published 2012

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

by Wang, Ting, Gifford, David K., Stormo, Gary D., Fraenkel, Ernest, MacIsaac, Kenzie Daniel, Gordon, D. Benjamin
Published 2010

Transperineal prostate biopsy: analysis of a uniform core sampling pattern that yields data on tumor volume limits in negative biopsies

by Kepner, Gordon R., Kepner, Jeremy
Published 2012

High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

by Gire, Stephen, Ellis, Crystal, Calderwood, Stephen B., Qadri, Firdausi, Hensley, Lisa E., Kellis, Manolis, Ryan, Edward T., LaRocque, Regina C., Harris, Jason B., Sabeti, Pardis C., Sealfon, Rachel Sima
Published 2012

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application

by Roubelakis, Maria G., Zotos, Pantelis, Papachristoudis, Georgios, Michalopoulos, Ioannis, Pappa, Kalliopi I., Anagnou, Nicholas P., Kossida, Sophia
Published 2009

Sparse estimation for structural variability

by Hosur, Raghavendra, Singh, Rohit, Berger, Bonnie
Published 2012

Introducing meta-services for biomedical information extraction

by Leitner, Florian, Krallinger, Martin, Rodriguez-Penagos, Carlos, Hakenberg, Jorg, Plake, Conrad, Kuo, Cheng-Ju, Hsu, Chun-Nan, Tsai, Richard Tzong-Han, Hung, Hsi-Chuan, Lau, William W., Johnson, Calvin A., Saetre, Rune, Yoshida, Kazuhiro, Chen, Yan Hua, Kim, Sun, Shin, Soo-Yong, Zhang, Byoung-Tak, Baumgartner, William A. Jr, Hunter, Lawrence, Haddow, Barry, Matthews, Michael, Wang, Xinglong, Ruch, Patrick, Ehrler, Frederic, Ozgur, Arzucan, Erkan, Gunes, Radev, Dragomir R., Krauthammer, Michael, Luong, ThaiBinh, Hoffmann, Robert, Sander, Chris, Valencia, Alfonso
Published 2009

A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

by Menze, Bjoern Holger, Kelm, Bernd Michael, Masuch, Ralf, Himmerlreich, Uwe, Bachert, Peter, Petrich, Wolfgang, Hamprecht, Fred A.
Published 2010

miRNAminer: a tool for homologous microRNA gene search

by Artzi, Shay, Kiezun, Adam, Shomron, Noam
Published 2010

GenePING: secure, scalable management of personal genomic data

by Adida, Ben, Kohane, Isaac
Published 2010

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application

by Roubelakis, Maria G., Zotos, Pantelis, Papachristoudis, Georgios, Michalopoulos, Ioannis, Pappa, Kalliopi I., Anagnou, Nicholas P., Kossida, Sophia
Published 2010

A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers

by Berger, Bonnie, Palmer, Nathan Patrick, Schmid, Patrick Raphael, Kohane, Isaac
Published 2012

Rapid haplotype inference for nuclear families

by Williams, Amy L., Housman, David E, Rinard, Martin C, Gifford, David K
Published 2012