In Silico Modeling of Shear-Stress-Induced Nitric Oxide Production in Endothelial Cells through Systems Biology

by Koo, Andrew Jia-An, Nordsletten, David, Umeton, Renato, Yankama, Beracah, Ayyadurai, V. A. Shiva, Dewey, C. Forbes, Garcia-Cardena, Guillermo, Dewey, C. Forbes
Published 2014

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens

by Beeharry, Neil, Fink, Lauren, Bhattacharjee, Vikram, Huang, Shao-shan Carol, Zhou, Yan, Yen, Tim, Ursu, Oana, Gosline, Sara Calafell, Fraenkel, Ernest
Published 2018

Screening therapeutic EMT blocking agents in a three-dimensional microenvironment

by Aref, Amir R., Huang, Ruby Yun-Ju, Yu, Weimiao, Chua, Kian-Ngiap, Sun, Wei, Tu, Ting-Yuan, Bai, Jing, Sim, Wen-Jing, Zervantonakis, Ioannis K., Thiery, Jean Paul, Kamm, Roger Dale
Published 2014

Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology

by Toni, Tina, Tidor, Bruce
Published 2013

Differential selective pressure alters rate of drug resistance acquisition in heterogeneous tumor populations

by Sun, Daphne S., Dalin, Simona, Hemann, Michael, Lauffenburger, Douglas A, Zhao, Boyang
Published 2017

SVM-RFE With MRMR Filter for Gene Selection

by Mundra, Piyushkumar A., Rajapakse, Jagath
Published 2011

Salvaging the septic heart through targeting the IL-6/p38 MAPK signaling network

by Cannell, Ian G., Yaffe, Michael B
Published 2018

Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling

by Aldridge, Bree B., Saez-Rodriguez, Julio, Muhlich, Jeremy L., Sorger, Peter K., Lauffenburger, Douglas A.
Published 2010

Metabolite profiling and pharmacokinetic evaluation of hydrocortisone in a perfused 3D human liver bioreactor

by Sarkar, Ujjal, Rivera-Burgos, Dinelia, Large, Emma M., Hughes, David J., Kodihalli, Ravindra, Dyer, Rachel Lee, Ebrahimkhani, Mohammad Reza, Wishnok, John S., Griffith, Linda G., Tannenbaum, Steven Robert
Published 2015

Human fetal/tumor metakaryotic stem cells: pangenomic homologous pairing and telomeric end-joining of chromatids

by Gostjeva, Elena V., Fomina, Janna N., Darroudi, Firouz, Gruhl, Amanda Natalie, Thilly, William G
Published 2015

Rapid Estimation of Binding Activity of Influenza Virus Hemagglutinin to Human and Avian Receptors

by Cao, Yang, Koh, Xiaoying, Dong, Libo, Du, Xiangjun, Wu, Aiping, Ding, Xilai, Deng, Hongyu, Shu, Yuelong, Chen, Jianzhu, Jiang, Taijiao
Published 2011

Frameshift Mutagenesis and Microsatellite Instability Induced by Human Alkyladenine DNA Glycosylase

by Klapacz, Joanna, Lingaraju, Gondichatnahalli M., Guo, Haiwei H., Shah, Dharini, Moar-Shoshani, Ayelet, Loeb, Lawrence A., Samson, Leona D.
Published 2015

The Oncogenic Lung Cancer Fusion Kinase CD74-ROS Activates a Novel Invasiveness Pathway through E-Syt1 Phosphorylation

by Johnson, Hannah, White, Forest M., Jun, Hyun Jung, Bronson, Roderick T., de Feraudy, Sebastien, Charest, Alain
Published 2014

In vivo and in vitro studies on the roles of neutrophil extracellular traps during secondary pneumococcal pneumonia after primary pulmonary influenza infection

by Narayana Moorthy, Anandi, Narasaraju, T., Rai, Prashant, Perumalsamy, R., Tan, K. B., Wang, Shi, Chow, Vincent T. K., Engelward, Bevin P
Published 2018

Sharing Information to Reconstruct Patient-Specific Pathways in Heterogeneous Diseases

by Gitty, Anthony, Braunstein, Alfredo, Pagnani, Andrea, Baldassi, Carlo, Borgs, Christian, Chayes, Jennifer, Zecchina, Riccardo, Fraenkel, Ernest, Gitter, Anthony
Published 2015

Toward More Accurate Ancestral Protein Genotype-Phenotype Reconstructions with the Use of Species Tree-Aware Gene Trees

by Groussin, Mathieu, Hobbs, Joanne K., Szöllősi, Gergely J., Gribaldo, Simonetta, Arcus, Vickery L., Gouy, Manolo
Published 2015

Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

by Mannion, Anthony, Shen, Zeli, Fox, James G
Published 2018

Production of Superoxide in Bacteria Is Stress- and Cell State-Dependent: A Gating-Optimized Flow Cytometry Method that Minimizes ROS Measurement Artifacts with Fluorescent Dyes

by McBee, Megan E., Chionh, Yok H., Sharaf, Mariam L., Ho, Peiying, Cai, Maggie W. L., Dedon, Peter C
Published 2017

The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data

by Samaga, Regina, Saez-Rodriguez, Julio, Alexopoulos, Leonidas G., Sorger, Peter K., Klamt, Steffen
Published 2010

Bayesian Model Selection Applied to the Analysis of Fluorescence Correlation Spectroscopy Data of Fluorescent Proteins in Vitro and in Vivo

by Sun, Guangyu, Guo, Syuan-Ming, Teh, Cathleen, Korzh, Vladimir, Bathe, Mark, Wohland, Thorsten
Published 2015