Integration of Proteomic, Transcriptional, and Interactome Data Reveals Hidden Signaling Components

by Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2012

Swimming Upstream: Identifying Proteomic Signals that Drive Transcriptional Changes using the Interactome and Multiple "-Omics" Datasets

by Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2014

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways

by Tuncbag, Nurcan, McCallum, Scott, Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2012

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

by Tuncbag, Nurcan, Braunstein, Alfredo, Pagnani, Andrea, Huang, Shao-Shan Carol, Chayes, Jennifer, Borgs, Christian, Zecchina, Riccardo, Fraenkel, Ernest, Tuncbag, Nurcan, Huang, Shao-Shan Carol, Fraenkel, Ernest
Published 2013

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens

by Beeharry, Neil, Fink, Lauren, Bhattacharjee, Vikram, Huang, Shao-shan Carol, Zhou, Yan, Yen, Tim, Ursu, Oana, Gosline, Sara Calafell, Fraenkel, Ernest
Published 2018

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling

by Huang, Shao-shan Carol, Clarke, David C., Gosline, Sara Jane Calafell, Labadorf, Adam, Chouinard, Candace R., Gordon, William, Lauffenburger, Douglas A., Fraenkel, Ernest
Published 2013