SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways

by Tuncbag, Nurcan, McCallum, Scott, Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2012

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

by Tuncbag, Nurcan, Braunstein, Alfredo, Pagnani, Andrea, Huang, Shao-Shan Carol, Chayes, Jennifer, Borgs, Christian, Zecchina, Riccardo, Fraenkel, Ernest, Tuncbag, Nurcan, Huang, Shao-Shan Carol, Fraenkel, Ernest
Published 2013

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package

by Tuncbag, Nurcan, Gosline, Sara Calafell, Kedaigle, Amanda Joy, Soltis, Anthony Robert, Gitter, Anthony, Fraenkel, Ernest
Published 2017

Network Modeling Identifies Patient-specific Pathways in Glioblastoma

by Pokorny, Jenny L., Sio, Terence T., Iyekegbe, Dennis O., Sarkaria, Jann N., Tuncbag, Nurcan, Milani, Pamela, Johnson, Hannah, Dalin, Simona, Fraenkel, Ernest, White, Forest M.
Published 2017

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways

by Khurana, Vikram, Chung, Chee Yeun, Auluck, Pavan K., Fanning, Saranna, Tardiff, Daniel F., Bartels, Theresa, Eichhorn, Stephen W., Benyamini, Hadar, Lou, Yali, Nutter-Upham, Andy, Baru, Valeriya, Freyzon, Yelena, Costanzo, Michael, San Luis, Bryan-Joseph, Schöndorf, David C., Barrasa, M. Inmaculada, Ehsani, Sepehr, Sanjana, Neville, Zhong, Quan, Gasser, Thomas, Bartel, David P., Vidal, Marc, Deleidi, Michela, Boone, Charles, Berger, Bonnie, Lindquist, Susan, Peng, Jian, Koeva, Martina I, Tuncbag, Nurcan, Fraenkel, Ernest
Published 2018