HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

by Berger, Emily, Yorukoglu, Deniz, Peng, Jian, Berger, Bonnie
Published 2014

Optimization of Duplex Stability and Terminal Asymmetry for shRNA Design

by Spiridonov, Alexey Nikolaevich, Matveeva, Olga V., Kang, Yibin, Sætrom, Pål, Nemtsov, Vladimir A., Ogurtsov, Aleksey Y., Nechipurenko, Yury D., Shabalina, Svetlana A.
Published 2010

Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes

by Lipson, Mark, Loh, Po-Ru, Sankararaman, Sriram, Patterson, Nick, Berger, Bonnie, Reich, David
Published 2016

Heterologous Stop Codon Readthrough of Metazoan Readthrough Candidates in Yeast

by Jungreis, Irwin, Kellis, Manolis, Chan, Clara Sophia
Published 2013

Phenotype Prediction Using Regularized Regression on Genetic Data in the DREAM5 Systems Genetics B Challenge

by Loh, Po-Ru, Tucker, George Jay, Berger, Bonnie
Published 2012

BETASCAN: Probable beta-amyloids Identified by Pairwise Probabilistic Analysis

by Bryan, Allen W., Menke, Matthew E., Cowen, Lenore J., Lindquist, Susan, Berger Leighton, Bonnie
Published 2010

Reconstructing Causal Biological Networks through Active Learning

by Cho, Hyunghoon, Berger Leighton, Bonnie, Peng, Jian
Published 2016

Reconstructing Roma History from Genome-Wide Data

by Moorjani, Priya, Patterson, Nick, Loh, Po-Ru, Lipson, Mark, Kisfali, Péter, Melegh, Bela I., Bonin, Michael, Kádaši, Ľudevít, Rieß, Olaf, Berger, Bonnie, Reich, David, Melegh, Béla
Published 2013

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

by Karp, Peter D., Berger, Bonnie, Kovats, Diane, Lengauer, Thomas, Linial, Michal, Sabeti, Pardis, Hide, Winston, Rost, Burkhard
Published 2015

The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling

by Klein, Daniel J., Baym, Michael Hartmann, Eckhoff, Philip
Published 2014

Ologs: A Categorical Framework for Knowledge Representation

by Spivak, David I., Kent, Robert E.
Published 2012

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

by Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F., Le, Khoa, Mahan, Alison E., Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M., Simen, Birgitte B., St. John, Elizabeth P., Chan-H, Swiderek, Kristine, Kleinstein, Stephen H., Alter, Galit, Seaman, Michael S., Koller, Daphne, Wilson, Ian A., Burton, Dennis R., Poignard, Pascal, Chakraborty, Arup K, Church, George M
Published 2014

Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals

by Chirn, Gung-wei, Rahman, Reazur, Sytnikova, Yuliya A., Matts, Jessica A., Zeng, Mei, Gerlach, Daniel, Yu, Michael, Berger, Bonnie, Naramura, Mayumi, Kile, Benjamin T., Lau, Nelson C.
Published 2016

Category Theoretic Analysis of Hierarchical Protein Materials and Social Networks

by Giesa, Tristan, Wood, Elizabeth, Spivak, David I, Buehler, Markus J
Published 2012

Genetic Determinants of Phosphate Response in Drosophila

by Bergwitz, Clemens, Wee, Mark J., Sinha, Sumi, Huang, Joanne, DeRobertis, Charles, Mensah, Lawrence B., Cohen, Jonathan, Friedman, Adam, Kulkarni, Meghana, Hu, Yanhui, Vinayagam, Arunachalam, Schnall-Levin, Michael, Berger, Bonnie, Perkins, Lizabeth A., Mohr, Stephanie E., Perrimon, Norbert
Published 2013

Radial and Spiral Stream Formation in Proteus mirabilis Colonies

by Xue, Chuan, Othmer, Hans G., Budrene-Kac, Elena O.
Published 2012

Multicoil2: predicting coiled coils and their oligomerization States from sequence in the twilight zone

by Gutwin, Karl, Keating, Amy E., Trigg, Jason, Berger Leighton, Bonnie
Published 2011

Group Selection as Behavioral Adaptation to Systematic Risk

by Zhang, Ruixun, Brennan, Thomas J., Lo, Andrew W.
Published 2014

HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

by Berger, Emily R, Yorukoglu, Deniz, Peng, Jian, Berger Leighton, Bonnie
Published 2018