Earth Microbiome Project and Global Systems Biology

by Jack A. Gilbert, Janet K. Jansson, Rob Knight
Published 2018-04-01

Estimate of the sequenced proportion of the global prokaryotic genome

by Zheng Zhang, Jianing Wang, Jinlan Wang, Jingjing Wang, Yuezhong Li
Published 2020-09-01

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

by Elizabeth Trembath-Reichert, David H. Case, Victoria J. Orphan
Published 2016-04-01

Impact of DNA purification method and primer selection on 16S rRNA gene metabarcoding on wine

by Francesco Cerutti, Diego Cravero, Antonella Costantini, Laura Pulcini, Paola Modesto, Pier Luigi Acutis, Enrico Vaudano, Simone Peletto
Published 2019-08-01

Alpha-, beta-, and gamma-diversity of bacteria varies across habitats.

by Kendra E Walters, Jennifer B H Martiny
Published 2020-01-01

A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns

by Robert Marsland, Wenping Cui, Pankaj Mehta
Published 2020-02-01

Patterns of gut bacterial colonization in three primate species.

by Erin A McKenney, Allen Rodrigo, Anne D Yoder
Published 2015-01-01

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

by McDonald Daniel, Clemente Jose C, Kuczynski Justin, Rideout Jai, Stombaugh Jesse, Wendel Doug, Wilke Andreas, Huse Susan, Hufnagle John, Meyer Folker, Knight Rob, Caporaso J
Published 2012-07-01

Human and environmental impacts on river sediment microbial communities.

by Sean M Gibbons, Edwin Jones, Angelita Bearquiver, Frederick Blackwolf, Wayne Roundstone, Nicole Scott, Jeff Hooker, Robert Madsen, Maureen L Coleman, Jack A Gilbert
Published 2014-01-01

Does diversity beget diversity in microbiomes?

by Naïma Madi, Michiel Vos, Carmen Lia Murall, Pierre Legendre, B Jesse Shapiro
Published 2020-11-01

Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research

by Daria Shamarina, Iana Stoyantcheva, Christopher E. Mason, Kyle Bibby, Eran Elhaik
Published 2017-10-01

Detecting eukaryotic microbiota with single-cell sensitivity in human tissue

by Susanne Lager, Marcus C. de Goffau, Ulla Sovio, Sharon J. Peacock, Julian Parkhill, D. Stephen Charnock-Jones, Gordon C. S. Smith
Published 2018-09-01

Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures

by Kazumori Mise, Wataru Iwasaki
Published 2020-10-01

Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges

by Cole G Easson, Robert W Thacker
Published 2014-10-01

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes

by Cui-Jing Zhang, Jie Pan, Chang-Hai Duan, Yong-Ming Wang, Yang Liu, Jian Sun, Hai-Chao Zhou, Xin Song, Meng Li
Published 2019-09-01

A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations

by Even S. Riiser, Thomas H. A. Haverkamp, Ørnulf Borgan, Kjetill S. Jakobsen, Sissel Jentoft, Bastiaan Star
Published 2018-07-01

Host-associated microbiomes are predicted by immune system complexity and climate

by Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan Kueneman, Emmi Kurosawa, Brandon C. LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Published 2020-02-01

American Gut: an Open Platform for Citizen Science Microbiome Research

by Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, The American Gut Consortium, Rob Knight
Published 2018-05-01

Colonization and maturation of the foal fecal microbiota from birth through weaning and the effect of weaning method

by Jacquay, Erica
Published 2017