ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data

by Dario Romagnoli, Giulia Boccalini, Martina Bonechi, Chiara Biagioni, Paola Fassan, Roberto Bertorelli, Veronica De Sanctis, Angelo Di Leo, Ilenia Migliaccio, Luca Malorni, Matteo Benelli
Published 2018-12-01

A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord

by Aaron M Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F Goodwin
Published 2020-04-01

Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells

by Kristen L Wells, Corey N Miller, Andreas R Gschwind, Wu Wei, Jonah D Phipps, Mark S Anderson, Lars M Steinmetz
Published 2020-11-01

Single-cell RNA-sequencing reveals distinct patterns of cell state heterogeneity in mouse models of breast cancer

by Syn Kok Yeo, Xiaoting Zhu, Takako Okamoto, Mingang Hao, Cailian Wang, Peixin Lu, Long Jason Lu, Jun-Lin Guan
Published 2020-08-01

The Human Cell Atlas: making ‘cell space’ for disease

by Chris P. Ponting
Published 2019-02-01

Pseudotime Dynamics in Melanoma Single-Cell Transcriptomes Reveals Different Mechanisms of Tumor Progression

by Henry Loeffler-Wirth, Hans Binder, Edith Willscher, Tobias Gerber, Manfred Kunz
Published 2018-04-01

Single-cell transcriptomics uncovers phenotypic alterations in the monocytes in a Chinese population with chronic cadmium exposure

by Yao Lu, Junru Wu, Wenduo Gu, Zhijun Huang, Zhihao Shu, Miao Huang, Jingyuan Chen, Mengli Zhou, Yuanyuan Bai, Xiang Chen, Yi Xiao, Minxue Shen, Dan Luo, Qihong Deng, Liyuan Chai, Meian He, Jicheng Gong, Hong Yuan, Qingbo Xu, Jingjing Cai
Published 2021-03-01

Single‐cell transcriptomics provides new insights into the role of fibroblasts during peritoneal fibrosis

by Jinhua Zhang, Yuxian Chen, Tufeng Chen, Bin Miao, Zuofu Tang, Xiao Hu, You Luo, Tong Zheng, Ning Na
Published 2021-03-01

Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infection

by Sergio Triana, Megan L Stanifer, Camila Metz‐Zumaran, Mohammed Shahraz, Markus Mukenhirn, Carmon Kee, Clara Serger, Ronald Koschny, Diana Ordoñez‐Rueda, Malte Paulsen, Vladimir Benes, Steeve Boulant, Theodore Alexandrov
Published 2021-07-01

Single-cell transcriptome analysis of CAR T-cell products reveals subpopulations, stimulation, and exhaustion signatures

by Xiaonan Wang, Carlotta Peticone, Ekaterini Kotsopoulou, Berthold Göttgens, Fernando J Calero-Nieto
Published 2021-01-01

Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin Cancers

by Emmanuel Dollinger, Daniel Bergman, Peijie Zhou, Scott X. Atwood, Qing Nie
Published 2020-10-01

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

by Aaron T. L. Lun, Samantha Riesenfeld, Tallulah Andrews, The Phuong Dao, Tomas Gomes, participants in the 1st Human Cell Atlas Jamboree, John C. Marioni
Published 2019-03-01

Critical Role of Synovial Tissue–Resident Macrophage and Fibroblast Subsets in the Persistence of Joint Inflammation

by Samuel Kemble, Adam P. Croft
Published 2021-09-01

ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics

by Helena García-Castro, Nathan J. Kenny, Marta Iglesias, Patricia Álvarez-Campos, Vincent Mason, Anamaria Elek, Anna Schönauer, Victoria A. Sleight, Jakke Neiro, Aziz Aboobaker, Jon Permanyer, Manuel Irimia, Arnau Sebé-Pedrós, Jordi Solana
Published 2021-04-01

Harnessing the Endogenous Plasticity of Pancreatic Islets: A Feasible Regenerative Medicine Therapy for Diabetes?

by Petra I. Lorenzo, Nadia Cobo-Vuilleumier, Eugenia Martín-Vázquez, Livia López-Noriega, Benoit R. Gauthier
Published 2021-04-01

Single-Cell Transcriptomics Reveals the Cellular Heterogeneity of Cardiovascular Diseases

by Mengxia Fu, Mengxia Fu, Jiangping Song, Jiangping Song, Jiangping Song
Published 2021-06-01

Single-cell sequencing reveals the potential oncogenic expression atlas of human iPSC-derived cardiomyocytes

by Minglin Ou, Min Zhao, Chunhong Li, Donge Tang, Yong Xu, Weier Dai, Weiguo Sui, Yue Zhang, Zhen Xiang, Chune Mo, Hua Lin, Yong Dai
Published 2021-02-01

Broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics

by Natasha D Durham, Aditi Agrawal, Eric Waltari, Derek Croote, Fabio Zanini, Mallorie Fouch, Edgar Davidson, Olivia Smith, Esteban Carabajal, John E Pak, Benjamin J Doranz, Makeda Robinson, Ana M Sanz, Ludwig L Albornoz, Fernando Rosso, Shirit Einav, Stephen R Quake, Krista M McCutcheon, Leslie Goo
Published 2019-12-01

Method for RNA extraction and transcriptomic analysis of single fungal spores

by Ivey A. Geoghegan, Richard D. Emes, David B. Archer, Simon V. Avery
Published 2020-01-01

Evolving Clinical Applications of Tissue Transcriptomics in Kidney Disease

by Andrea L. Oliverio, Tiffany Bellomo, Laura H. Mariani
Published 2019-07-01